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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_028395 | AP000530 | 13236125 | 3 | chr22 | NT_028395 | AP000531 | 13269093 | 3 | 12528 | 0 | 0 | 12528 |
| S/G/Y/R/B/O |
NT_028395 | AP000530 | 13236125 | 3 | chr14 | NT_037845 | AL512624 | 13731025 | 3 | 32869 | 0 | 0 | 32869 |
| S/G/Y/R/B/O |
NT_028395 | AP000530 | 13236125 | 3 |   |   | AC134879 | 13166751 | | 32771 | 0 | 0 | 32771 |
| S/G/Y/R/B/O |
NT_028395 | AP000530 | 13236125 | 3 |   |   | AL929601 | 13731025 | | 32662 | 0 | 0 | 32662 |
| S/G/Y/R/B/O |
NT_028395 | AP000530 | 13236125 | 3 |   |   | AL929601 | 13731025 | | 32662 | 0 | 0 | 32662 |
| S/G/Y/R/B/O |
NT_028395 | AP000531 | 13269093 | 3 | chr22 | NT_028395 | AP000532 | 13290584 | 3 | 7909 | 0 | 0 | 7909 |
| S/G/Y/R/B/O |
NT_028395 | AP000531 | 13269093 | 3 | chr14 | NT_037845 | AL512624 | 13731025 | 3 | 33880 | 0 | 0 | 33880 |
| S/G/Y/R/B/O |
NT_028395 | AP000531 | 13269093 | 3 |   |   | AC003064 | 13269093 | | 16566 | 0 | 0 | 16566 |
| S/G/Y/R/B/O |
NT_028395 | AP000531 | 13269093 | 3 |   |   | AC134879 | 13269093 | | 21936 | 0 | 9091 | 31027 |
| S/G/Y/R/B/O |
NT_028395 | AP000532 | 13290584 | 3 | chr22 | NT_028395 | AP000533 | 13320186 | 3 | 2486 | 0 | 0 | 2486 |
| S/G/Y/R/B/O |
NT_028395 | AP000532 | 13290584 | 3 | chr14 | NT_037845 | AC133471 | 13251915 | 2 | 12676 | 0 | 0 | 12676 |
| S/G/Y/R/B/O |
NT_028395 | AP000532 | 13290584 | 3 | chr14 | NT_037845 | AL929600 | 13243999 | 2 | 20662 | 0 | 0 | 20662 |
| S/G/Y/R/B/O |
NT_028395 | AP000532 | 13290584 | 3 | chr14 | NT_037845 | AL929600 | 13243999 | 2 | 20662 | 0 | 0 | 20662 |
| S/G/Y/R/B/O |
NT_028395 | AP000532 | 13290584 | 3 |   |   | AC002471 | 13290584 | | 29512 | 0 | 0 | 29512 |
| S/G/Y/R/B/O |
NT_028395 | AP000532 | 13290584 | 3 |   |   | AC003064 | 13290584 | | 25908 | 0 | 0 | 25908 |
| S/G/Y/R/B/O |
NT_028395 | AP000532 | 13290584 | 3 |   |   | AC134879 | 13251915 | | 24713 | 0 | 0 | 24713 |
| S/G/Y/R/B/O |
NT_028395 | AP000533 | 13320186 | 3 | chr22 | NT_028395 | AP000534 | 13363294 | 3 | 2499 | 0 | 0 | 2499 |
| S/G/Y/R/B/O |
NT_028395 | AP000533 | 13320186 | 3 | chr14 | NT_037845 | AL512310 | 13885102 | 3 | 45278 | 0 | 0 | 45278 |
| S/G/Y/R/B/O |
NT_028395 | AP000533 | 13320186 | 3 | chr14 | NT_037845 | AL929600 | 13243999 | 2 | 45385 | 0 | 0 | 45385 |
| S/G/Y/R/B/O |
NT_028395 | AP000533 | 13320186 | 3 | chr14 | NT_037845 | AL929600 | 13243999 | 2 | 45385 | 0 | 0 | 45385 |
| S/G/Y/R/B/O |
NT_028395 | AP000533 | 13320186 | 3 |   |   | AL929601 | 13243999 | | 19342 | 0 | 0 | 19342 |
| S/G/Y/R/B/O |
NT_028395 | AP000533 | 13320186 | 3 |   |   | AL929601 | 13243999 | | 19342 | 0 | 0 | 19342 |
| S/G/Y/R/B/O |
NT_028395 | AP000534 | 13363294 | 3 | chr22 | NT_028395 | AP000535 | 13398562 | 3 | 4724 | 0 | 0 | 4724 |
| S/G/Y/R/B/O |
NT_028395 | AP000534 | 13363294 | 3 | chr14 | NT_037845 | AC133471 | 13251915 | 2 | 37477 | 0 | 0 | 37477 |
| S/G/Y/R/B/O |
NT_028395 | AP000534 | 13363294 | 3 | chr14 | NT_037845 | AL512310 | 13885102 | 3 | 37516 | 0 | 0 | 37516 |
| S/G/Y/R/B/O |
NT_028395 | AP000534 | 13363294 | 3 | chr14 | NT_037845 | AL929600 | 13243999 | 2 | 37751 | 0 | 0 | 37751 |
| S/G/Y/R/B/O |
NT_028395 | AP000534 | 13363294 | 3 | chr14 | NT_037845 | AL929600 | 13243999 | 2 | 37751 | 0 | 0 | 37751 |
| S/G/Y/R/B/O |
NT_028395 | AP000534 | 13363294 | 3 |   |   | AC080000 | 13363294 | | 17923 | 0 | 0 | 17923 |
| S/G/Y/R/B/O |
NT_028395 | AP000535 | 13398562 | 3 | chr22 | NT_028395 | AP000536 | 13432987 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_028395 | AP000535 | 13398562 | 3 | chr14 | NT_037845 | AL929600 | 13243999 | 2 | 10411 | 0 | 0 | 10411 |
| S/G/Y/R/B/O |
NT_028395 | AP000535 | 13398562 | 3 | chr14 | NT_037845 | AL929600 | 13243999 | 2 | 10411 | 0 | 0 | 10411 |
| S/G/Y/R/B/O |
NT_028395 | AP000536 | 13432987 | 3 | chr22 | NT_028395 | AP000537 | 13467444 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_028395 | AP000537 | 13467444 | 3 | chr22 | NT_028395 | AP000538 | 13504394 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_028395 | AP000538 | 13504394 | 3 | chr22 | NT_028395 | AP000539 | 13522663 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_028395 | AP000539 | 13522663 | 3 | chr22 | NT_028395 | AP000540 | 13554684 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_028395 | AP000540 | 13554684 | 3 | chr22 | NT_028395 | AP000541 | 13577253 | 3 | 2677 | 0 | 0 | 2677 |
| S/G/Y/R/B/O |
NT_028395 | AP000541 | 13577253 | 3 | chr22 | NT_028395 | AP000542 | 13609563 | 3 | 8585 | 0 | 0 | 8585 |
| S/G/Y/R/B/O |
NT_028395 | AP000542 | 13609563 | 3 |   |   |   |   |   |   |   |   |   |
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