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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_011516 | AP000522 | 13000001 | 3 | chr22 | NT_011516 | AP000523 | 13037694 | 3 | 2256 | 0 | 0 | 2256 |
| S/G/Y/R/B/O |
NT_011516 | AP000522 | 13000001 | 3 | chr14 | NT_037845 | AL589743 | 13510229 | 3 | 37402 | 0 | 0 | 37402 |
| S/G/Y/R/B/O |
NT_011516 | AP000522 | 13000001 | 3 | chr14 | NT_035315 | AL603712 | 13103695 | 2 | 28522 | 0 | 0 | 28522 |
| S/G/Y/R/B/O |
NT_011516 | AP000522 | 13000001 | 3 | chr14 | NT_035315 | AL749540 | 13050001 | 3 | 37630 | 0 | 0 | 37630 |
| S/G/Y/R/B/O |
NT_011516 | AP000523 | 13037694 | 3 | chr22 | NT_011516 | AP000524 | 13076728 | 3 | 0 | 473 | 0 | 473 |
| S/G/Y/R/B/O |
NT_011516 | AP000523 | 13037694 | 3 | chr14 | NT_037845 | AL589182 | 13698538 | 3 | 20409 | 0 | 0 | 20409 |
| S/G/Y/R/B/O |
NT_011516 | AP000523 | 13037694 | 3 | chr14 | NT_037845 | AL589743 | 13510229 | 3 | 40525 | 0 | 31699 | 72224 |
| S/G/Y/R/B/O |
NT_011516 | AP000523 | 13037694 | 3 | chr14 | NT_035315 | AL749540 | 13050001 | 3 | 41043 | 0 | 0 | 41043 |
| S/G/Y/R/B/O |
NT_011516 | AP000523 | 13037694 | 3 |   |   | AC080181 | 13037694 | | 18304 | 3093 | 9153 | 30550 |
| S/G/Y/R/B/O |
NT_011516 | AP000523 | 13037694 | 3 |   |   | AL929602 | 13050001 | | 32637 | 0 | 0 | 32637 |
| S/G/Y/R/B/O |
NT_011516 | AP000523 | 13037694 | 3 |   |   | AL929602 | 13050001 | | 32637 | 0 | 0 | 32637 |
| S/G/Y/R/B/O |
NT_011516 | AP000524 | 13076728 | 3 | chr22 | NT_011516 | AP000525 | 13080710 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011516 | AP000525 | 13080710 | 3 | chr22 | NT_011516 | AP000526 | 13119166 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011516 | AP000525 | 13080710 | 3 |   |   | AC080181 | 13037694 | | 24748 | 0 | 0 | 24748 |
| S/G/Y/R/B/O |
NT_011516 | AP000526 | 13119166 | 3 | chr22 | NT_011516 | AP000527 | 13133402 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011516 | AP000526 | 13119166 | 3 | chr14 | NT_037845 | AL589182 | 13698538 | 3 | 36706 | 0 | 0 | 36706 |
| S/G/Y/R/B/O |
NT_011516 | AP000526 | 13119166 | 3 | chr14 | NT_037845 | AL589743 | 13510229 | 3 | 33825 | 0 | 0 | 33825 |
| S/G/Y/R/B/O |
NT_011516 | AP000526 | 13119166 | 3 |   |   | AL929602 | 13510229 | | 36702 | 0 | 0 | 36702 |
| S/G/Y/R/B/O |
NT_011516 | AP000526 | 13119166 | 3 |   |   | AL929602 | 13510229 | | 36702 | 0 | 0 | 36702 |
| S/G/Y/R/B/O |
NT_011516 | AP000527 | 13133402 | 3 | chr22 | NT_011516 | AP000528 | 13166751 | 3 | 6250 | 0 | 0 | 6250 |
| S/G/Y/R/B/O |
NT_011516 | AP000528 | 13166751 | 3 | chr22 | NT_011516 | AP000529 | 13202795 | 3 | 6549 | 0 | 0 | 6549 |
| S/G/Y/R/B/O |
NT_011516 | AP000528 | 13166751 | 3 | chr14 | NT_037845 | AL512624 | 13731025 | 3 | 39340 | 0 | 0 | 39340 |
| S/G/Y/R/B/O |
NT_011516 | AP000528 | 13166751 | 3 | chr14 | NT_037845 | AL589182 | 13698538 | 3 | 42021 | 0 | 0 | 42021 |
| S/G/Y/R/B/O |
NT_011516 | AP000528 | 13166751 | 3 |   |   | AC134879 | 129827501 | | 27048 | 3578 | 5770 | 36396 |
| S/G/Y/R/B/O |
NT_011516 | AP000528 | 13166751 | 3 |   |   | AL929602 | 13698538 | | 20113 | 0 | 0 | 20113 |
| S/G/Y/R/B/O |
NT_011516 | AP000528 | 13166751 | 3 |   |   | AL929602 | 13698538 | | 20113 | 0 | 0 | 20113 |
| S/G/Y/R/B/O |
NT_011516 | AP000529 | 13202795 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_011516 | AP000529 | 13202795 | 3 | chr14 | NT_037845 | AL512624 | 13731025 | 3 | 37783 | 0 | 0 | 37783 |
| S/G/Y/R/B/O |
NT_011516 | AP000529 | 13202795 | 3 | chr14 | NT_037845 | AL589182 | 13698538 | 3 | 21404 | 0 | 0 | 21404 |
| S/G/Y/R/B/O |
NT_011516 | AP000529 | 13202795 | 3 |   |   | AC080181 | 128708214 | | 12385 | 0 | 12542 | 24927 |
| S/G/Y/R/B/O |
NT_011516 | AP000529 | 13202795 | 3 |   |   | AL929601 | 13698538 | | 37835 | 0 | 0 | 37835 |
| S/G/Y/R/B/O |
NT_011516 | AP000529 | 13202795 | 3 |   |   | AL929601 | 13698538 | | 37835 | 0 | 0 | 37835 |
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