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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_011519 | AP000543 | 13792348 | 3 | chr22 | NT_011519 | AP000544 | 13810166 | 3 | 18946 | 0 | 0 | 18946 |
| S/G/Y/R/B/O |
NT_011519 | AP000544 | 13810166 | 3 | chr22 | NT_011519 | AP000545 | 13849159 | 3 | 4336 | 0 | 0 | 4336 |
| S/G/Y/R/B/O |
NT_011519 | AP000545 | 13849159 | 3 | chr22 | NT_011519 | AP000546 | 13882069 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AP000546 | 13882069 | 3 | chr22 | NT_011519 | AP000547 | 13917811 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AP000547 | 13917811 | 3 | chr22 | NT_011519 | AP000365 | 14036360 | 3 | 33342 | 0 | 0 | 33342 |
| S/G/Y/R/B/O |
NT_011519 | AP000365 | 14036360 | 3 | chr22 | NT_011519 | AC005301 | 14108179 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AC005301 | 14108179 | 3 | chr22 | NT_011519 | AC007064 | 14221867 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AC007064 | 14221867 | 3 | chr22 | NT_011519 | AC006548 | 14248207 | 3 | 62088 | 0 | 0 | 62088 |
| S/G/Y/R/B/O |
NT_011519 | AC006548 | 14248207 | 3 | chr22 | NT_011519 | AC006946 | 14448356 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AC006946 | 14448356 | 3 | chr22 | NT_011519 | AC005300 | 14533834 | 3 | 64782 | 0 | 0 | 64782 |
| S/G/Y/R/B/O |
NT_011519 | AC005300 | 14533834 | 3 | chr22 | NT_011519 | AC005399 | 14629396 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AC005399 | 14629396 | 3 | chr22 | NT_011519 | AC004019 | 14759040 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AC004019 | 14759040 | 3 | chr22 | NT_011519 | AC007666 | 14911301 | 3 | 104230 | 0 | 0 | 104230 |
| S/G/Y/R/B/O |
NT_011519 | AC004019 | 14759040 | 3 |   |   | AC000052 | 14448356 | | 185272 | 0 | 0 | 185272 |
| S/G/Y/R/B/O |
NT_011519 | AC007666 | 14911301 | 3 | chr22 | NT_011519 | AC006285 | 15050689 | 3 | 15507 | 0 | 0 | 15507 |
| S/G/Y/R/B/O |
NT_011519 | AC007666 | 14911301 | 3 |   |   | AC000052 | 14911301 | | 108989 | 0 | 0 | 108989 |
| S/G/Y/R/B/O |
NT_011519 | AC006285 | 15050689 | 3 | chr22 | NT_011519 | AC016026 | 15185354 | 3 | 6757 | 0 | 0 | 6757 |
| S/G/Y/R/B/O |
NT_011519 | AC006285 | 15050689 | 3 |   |   | AC007845 | 14911301 | | 33899 | 0 | 0 | 33899 |
| S/G/Y/R/B/O |
NT_011519 | AC006285 | 15050689 | 3 |   |   | AC016025 | 14911301 | | 105643 | 0 | 0 | 105643 |
| S/G/Y/R/B/O |
NT_011519 | AC016026 | 15185354 | 3 | chr22 | NT_011519 | AC016027 | 15366129 | 3 | 3497 | 0 | 0 | 3497 |
| S/G/Y/R/B/O |
NT_011519 | AC016026 | 15185354 | 3 |   |   | AC007845 | 15050689 | | 106648 | 0 | 0 | 106648 |
| S/G/Y/R/B/O |
NT_011519 | AC016026 | 15185354 | 3 |   |   | AC016025 | 15050689 | | 81121 | 0 | 0 | 81121 |
| S/G/Y/R/B/O |
NT_011519 | AC016027 | 15366129 | 3 | chr22 | NT_011519 | AC008101 | 15459471 | 3 | 77884 | 0 | 0 | 77884 |
| S/G/Y/R/B/O |
NT_011519 | AC016027 | 15366129 | 3 | chr22 | NT_011519 | AC008079 | 15492047 | 3 | 45502 | 0 | 0 | 45502 |
| S/G/Y/R/B/O |
NT_011519 | AC016027 | 15366129 | 3 |   |   | AC007324 | 15366129 | | 23832 | 0 | 0 | 23832 |
| S/G/Y/R/B/O |
NT_011519 | AC016027 | 15366129 | 3 |   |   | AC016830 | 15185354 | | 174517 | 0 | 0 | 174517 |
| S/G/Y/R/B/O |
NT_011519 | AC008101 | 15459471 | 3 | chr22 | NT_011519 | AC008079 | 15492047 | 3 | 94947 | 0 | 0 | 94947 |
| S/G/Y/R/B/O |
NT_011519 | AC008101 | 15459471 | 3 |   |   | AC016830 | 15366129 | | 90893 | 0 | 0 | 90893 |
| S/G/Y/R/B/O |
NT_011519 | AC008079 | 15492047 | 3 | chr22 | NT_011519 | AC008132 | 15637330 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AC008079 | 15492047 | 3 | chr22 | NT_011519 | AC016027 | 15366129 | 3 | 45502 | 0 | 0 | 45502 |
| S/G/Y/R/B/O |
NT_011519 | AC008079 | 15492047 | 3 |   |   | AC007324 | 15366129 | | 67536 | 0 | 0 | 67536 |
| S/G/Y/R/B/O |
NT_011519 | AC008079 | 15492047 | 3 |   |   | AC011718 | 15459471 | | 46522 | 0 | 0 | 46522 |
| S/G/Y/R/B/O |
NT_011519 | AC008079 | 15492047 | 3 |   |   | AC016830 | 15366129 | | 57994 | 0 | 0 | 57994 |
| S/G/Y/R/B/O |
NT_011519 | AC008132 | 15637330 | 3 | chr22 | NT_011519 | AC008103 | 15773364 | 3 | 0 | 0 | 9391 | 9391 |
| S/G/Y/R/B/O |
NT_011519 | AC008132 | 15637330 | 3 | chr22 | NT_011520 | AP000551 | 18302680 | 3 | 12089 | 0 | 0 | 12089 |
| S/G/Y/R/B/O |
NT_011519 | AC008132 | 15637330 | 3 | chr22 | NT_011520 | AP000552 | 18313275 | 3 | 29130 | 0 | 0 | 29130 |
| S/G/Y/R/B/O |
NT_011519 | AC008132 | 15637330 | 3 |   |   | AC002051 | 15366129 | | 14031 | 0 | 0 | 14031 |
| S/G/Y/R/B/O |
NT_011519 | AC008132 | 15637330 | 3 |   |   | AC007324 | 17768852 | | 19746 | 0 | 0 | 19746 |
| S/G/Y/R/B/O |
NT_011519 | AC008132 | 15637330 | 3 |   |   | AC007325 | 17768852 | | 80403 | 0 | 0 | 80403 |
| S/G/Y/R/B/O |
NT_011519 | AC008132 | 15637330 | 3 |   |   | AC007708 | 17768852 | | 62228 | 0 | 0 | 62228 |
| S/G/Y/R/B/O |
NT_011519 | AC008132 | 15637330 | 3 |   |   | AC009288 | 15773364 | | 60290 | 0 | 0 | 60290 |
| S/G/Y/R/B/O |
NT_011519 | AC008132 | 15637330 | 3 |   |   | AC012330 | 15773364 | | 94124 | 0 | 0 | 94124 |
| S/G/Y/R/B/O |
NT_011519 | AC008132 | 15637330 | 3 |   |   | AC013360 | 15773364 | | 59638 | 1722 | 76193 | 137553 |
| S/G/Y/R/B/O |
NT_011519 | AC008103 | 15773364 | 3 | chr22 | NT_011519 | AC007326 | 15871921 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AC008103 | 15773364 | 3 |   |   | AC013360 | 15637330 | | 16676 | 0 | 14070 | 30746 |
| S/G/Y/R/B/O |
NT_011519 | AC007326 | 15871921 | 3 | chr22 | NT_011519 | AC000095 | 15932454 | 3 | 3414 | 0 | 0 | 3414 |
| S/G/Y/R/B/O |
NT_011519 | AC007326 | 15871921 | 3 |   |   | AC000069 | 15637330 | | 38127 | 0 | 0 | 38127 |
| S/G/Y/R/B/O |
NT_011519 | AC000095 | 15932454 | 3 | chr22 | NT_011519 | AC004461 | 15972768 | 3 | 15684 | 0 | 0 | 15684 |
| S/G/Y/R/B/O |
NT_011519 | AC000095 | 15932454 | 3 |   |   | AC002522 | 15932454 | | 28483 | 0 | 0 | 28483 |
| S/G/Y/R/B/O |
NT_011519 | AC004461 | 15972768 | 3 | chr22 | NT_011519 | AC004462 | 16001957 | 3 | 6717 | 0 | 0 | 6717 |
| S/G/Y/R/B/O |
NT_011519 | AC004461 | 15972768 | 3 |   |   | AC002522 | 15932454 | | 27058 | 0 | 0 | 27058 |
| S/G/Y/R/B/O |
NT_011519 | AC004462 | 16001957 | 3 | chr22 | NT_011519 | AC004471 | 16031250 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AC004471 | 16031250 | 3 | chr22 | NT_011519 | AC004463 | 16074540 | 3 | 3797 | 0 | 0 | 3797 |
| S/G/Y/R/B/O |
NT_011519 | AC004471 | 16031250 | 3 |   |   | AL359537 | 16074540 | | 21624 | 1431 | 0 | 23055 |
| S/G/Y/R/B/O |
NT_011519 | AC004471 | 16031250 | 3 |   |   | AL391096 | 16074540 | | 23930 | 0 | 0 | 23930 |
| S/G/Y/R/B/O |
NT_011519 | AC004463 | 16074540 | 3 | chr22 | NT_011519 | L77569 | 16108997 | 3 | 5798 | 0 | 0 | 5798 |
| S/G/Y/R/B/O |
NT_011519 | AC004463 | 16074540 | 3 |   |   | AL359537 | 16031250 | | 13696 | 10727 | 4185 | 28608 |
| S/G/Y/R/B/O |
NT_011519 | AC004463 | 16074540 | 3 |   |   | AL391096 | 16031250 | | 16738 | 0 | 2149 | 18887 |
| S/G/Y/R/B/O |
NT_011519 | L77569 | 16108997 | 3 | chr22 | NT_011519 | AC000081 | 16136237 | 3 | 14440 | 0 | 0 | 14440 |
| S/G/Y/R/B/O |
NT_011519 | L77569 | 16108997 | 3 |   |   | AC000072 | 16108997 | | 39501 | 0 | 0 | 39501 |
| S/G/Y/R/B/O |
NT_011519 | L77569 | 16108997 | 3 |   |   | AL359537 | 16074540 | | 23595 | 6437 | 5466 | 35498 |
| S/G/Y/R/B/O |
NT_011519 | AC000081 | 16136237 | 3 | chr22 | NT_011519 | AC000094 | 16180242 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AC000081 | 16136237 | 3 |   |   | AC000072 | 16074540 | | 12296 | 0 | 0 | 12296 |
| S/G/Y/R/B/O |
NT_011519 | AC000081 | 16136237 | 3 |   |   | AL359537 | 16074540 | | 14175 | 2278 | 9798 | 26251 |
| S/G/Y/R/B/O |
NT_011519 | AC000081 | 16136237 | 3 |   |   | AL391096 | 16074540 | | 29061 | 0 | 0 | 29061 |
| S/G/Y/R/B/O |
NT_011519 | AC000094 | 16180242 | 3 | chr22 | NT_011519 | AC000085 | 16186681 | 3 | 23465 | 0 | 0 | 23465 |
| S/G/Y/R/B/O |
NT_011519 | AC000085 | 16186681 | 3 | chr22 | NT_011519 | AC000092 | 16286833 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AC000085 | 16186681 | 3 |   |   | AC000073 | 16186681 | | 36114 | 0 | 0 | 36114 |
| S/G/Y/R/B/O |
NT_011519 | AC000092 | 16286833 | 3 | chr22 | NT_011519 | AC000079 | 16325515 | 3 | 0 | 1875 | 0 | 1875 |
| S/G/Y/R/B/O |
NT_011519 | AC000079 | 16325515 | 3 | chr22 | NT_011519 | AC000068 | 16363180 | 3 | 15191 | 0 | 0 | 15191 |
| S/G/Y/R/B/O |
NT_011519 | AC000068 | 16363180 | 3 | chr22 | NT_011519 | AC000087 | 16391923 | 3 | 6264 | 0 | 0 | 6264 |
| S/G/Y/R/B/O |
NT_011519 | AC000087 | 16391923 | 3 | chr22 | NT_011519 | AC000088 | 16427730 | 3 | 4242 | 0 | 0 | 4242 |
| S/G/Y/R/B/O |
NT_011519 | AC000088 | 16427730 | 3 | chr22 | NT_011519 | AC000082 | 16464164 | 3 | 17274 | 0 | 0 | 17274 |
| S/G/Y/R/B/O |
NT_011519 | AC000082 | 16464164 | 3 | chr22 | NT_011519 | AC000070 | 16488908 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AC000070 | 16488908 | 3 | chr22 | NT_011519 | AC000086 | 16513213 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AC000086 | 16513213 | 3 | chr22 | NT_011519 | AC000077 | 16553813 | 3 | 0 | 2055 | 0 | 2055 |
| S/G/Y/R/B/O |
NT_011519 | AC000077 | 16553813 | 3 | chr22 | NT_011519 | AC002475 | 16587497 | 3 | 0 | 0 | 100 | 100 |
| S/G/Y/R/B/O |
NT_011519 | AC002475 | 16587497 | 3 | chr22 | NT_011519 | AC000067 | 16592114 | 3 | 0 | 0 | 120 | 120 |
| S/G/Y/R/B/O |
NT_011519 | AC000067 | 16592114 | 3 | chr22 | NT_011519 | AC000093 | 16632639 | 3 | 0 | 1509 | 0 | 1509 |
| S/G/Y/R/B/O |
NT_011519 | AC000093 | 16632639 | 3 | chr22 | NT_011519 | AC000091 | 16673816 | 3 | 6643 | 0 | 0 | 6643 |
| S/G/Y/R/B/O |
NT_011519 | AC000091 | 16673816 | 3 | chr22 | NT_011519 | AC000089 | 16712101 | 3 | 0 | 846 | 0 | 846 |
| S/G/Y/R/B/O |
NT_011519 | AC000089 | 16712101 | 3 | chr22 | NT_011519 | AC000076 | 16751009 | 3 | 9248 | 0 | 0 | 9248 |
| S/G/Y/R/B/O |
NT_011519 | AC000076 | 16751009 | 3 | chr22 | NT_011519 | AC000078 | 16782852 | 3 | 0 | 618 | 0 | 618 |
| S/G/Y/R/B/O |
NT_011519 | AC000078 | 16782852 | 3 | chr22 | NT_011519 | AC000090 | 16826660 | 3 | 0 | 746 | 0 | 746 |
| S/G/Y/R/B/O |
NT_011519 | AC000090 | 16826660 | 3 | chr22 | NT_011519 | AC000080 | 16871330 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AC000080 | 16871330 | 3 | chr22 | NT_011519 | AC005663 | 16900204 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AC000080 | 16871330 | 3 |   |   | AC000074 | 16782852 | | 10140 | 0 | 0 | 10140 |
| S/G/Y/R/B/O |
NT_011519 | AC005663 | 16900204 | 3 | chr22 | NT_011519 | AC006547 | 16977128 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_011519 | AC005663 | 16900204 | 3 |   |   | AC000074 | 16782852 | | 44401 | 0 | 0 | 44401 |
| S/G/Y/R/B/O |
NT_011519 | AC005663 | 16900204 | 3 |   |   | AC002491 | 16782852 | | 42201 | 0 | 0 | 42201 |
| S/G/Y/R/B/O |
NT_011519 | AC006547 | 16977128 | 3 | chr22 | NT_011519 | AC007663 | 17081510 | 3 | 64386 | 0 | 0 | 64386 |
| S/G/Y/R/B/O |
NT_011519 | AC006547 | 16977128 | 3 |   |   | AC000075 | 16782852 | | 37347 | 0 | 0 | 37347 |
| S/G/Y/R/B/O |
NT_011519 | AC006547 | 16977128 | 3 |   |   | AC005664 | 16782852 | | 65413 | 0 | 0 | 65413 |
| S/G/Y/R/B/O |
NT_011519 | AC006547 | 16977128 | 3 |   |   | AC006549 | 16782852 | | 97140 | 0 | 0 | 97140 |
| S/G/Y/R/B/O |
NT_011519 | AC006547 | 16977128 | 3 |   |   | AC058790 | 17081510 | | 75406 | 0 | 0 | 75406 |
| S/G/Y/R/B/O |
NT_011519 | AC007663 | 17081510 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_011519 | AC007663 | 17081510 | 3 |   |   | AC000097 | 17081510 | | 58615 | 0 | 0 | 58615 |
| S/G/Y/R/B/O |
NT_011519 | AC007663 | 17081510 | 3 |   |   | AC058790 | 16977128 | | 167258 | 0 | 0 | 167258 |
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