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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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| Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
| S/G/Y/R/B/O |
NT_010168 | AL122127 | 100125009 | 3 | chr14 | NT_010168 | AB019441 | 100294811 | 3 | 33572 | 0 | 0 | 33572 |
| S/G/Y/R/B/O |
NT_010168 | AB019441 | 100294811 | 3 | chr14 | NT_010168 | AB019440 | 100418246 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010168 | AB019440 | 100418246 | 3 | chr14 | NT_010168 | AB019439 | 100618246 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010168 | AB019439 | 100618246 | 3 | chr14 | NT_010168 | AB019438 | 100818246 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010168 | AB019438 | 100818246 | 3 | chr14 | NT_010168 | AB019437 | 101018246 | 3 | 0 | 0 | 0 | 0 |
| S/G/Y/R/B/O |
NT_010168 | AB019438 | 100818246 | 3 |   |   | AC013778 | 100125009 | | 77643 | 3446 | 2238 | 83327 |
| S/G/Y/R/B/O |
NT_010168 | AB019437 | 101018246 | 3 |   |   |   |   |   |   |   |   |   |
| S/G/Y/R/B/O |
NT_010168 | AB019437 | 101018246 | 3 |   |   | AC013778 | 100125009 | | 23698 | 5577 | 13611 | 42886 |
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