# hubtools splitHap, 2026-09-07 19:29
# input hub: hub/hub.txt
# genomes:   GCF_048771995.1, GCA_048772025.1
#
# Records per track.  'source' is what was read out of the input file. A
# record whose sequence both assemblies have is written to both, so the two
# genome columns can add up to more than source; where they add up to less,
# the noSeq, clipped and dropped columns say where the difference went.
#track         type         source    GCF_048771995.1  GCA_048772025.1  noSeq  clipped  dropped
gcPercent      bigWig       10495330  5535350          4959611          369    0        0
seqEntropy     bigWig       10695898  5641633          5053886          379    0        0
nonBdna        bigBed9      11255555  5917024          5337506          1023   0        2
covHifi        bigWig       2100354   1108175          992121           58     0        0
covOnt         bigWig       2069444   1091892          977510           42     0        0
covClr         bigWig       2063751   1085006          978673           72     0        0
egapx          bigGenePred  142191    73600            68591            0      0        0
retrocopies    bigGenePred  182       106              76               0      0        0
transposons    bigBed9+     530844    292100           238744           0      0        0
tandemRepeats  bigBed6+     981904    510467           471358           79     0        0
satellome      bigBed6      901       521              380              0      0        0
centroSat      bigBed9+     7013      3851             3162             0      0        0
centroCores    bigBed9+     80        41               39               0      0        0
centroMarkers  bigBed4      225       114              111              0      0        0
telomeres      bigBed4+     160       82               78               0      0        0
itsRepeats     bigBed3      664       336              328              0      0        0
newRegions     bigBed3      27210     14180            13027            0      0        3
largeSv        bigBed4      42        21               21               0      0        0
methyl5mC      bigWig       21975548  11732879         10242669         0      0        0
compartE1      bigWig       18840     10670            8170             0      3        0
compartAB      bigBed9      3103      1634             1469             0      0        0
#
# Every one of these rows was checked as it was written: the records read
# equal the records that matched a sequence plus the ones that matched none,
# and every match either produced an output record or was dropped. splitHap
# stops rather than write this file if a track does not add up.

# Sequences that neither assembly has. Every record on one of these is in
# neither output hub.
#sequence	records
rDNA_morph_2	639
rDNA_morph_1	575
rDNA_morph_3	572
chrMT	236

# Records reaching past the end of their sequence in the target assembly.
# The assembly the hub was built on is longer there than the one the records
# are being moved to. Coverage records are clipped to the end of the
# sequence, features are dropped, because trimming a feature would move its
# end and could break its blocks. 'overhang' is the furthest a record
# reached past the end.
#sequence	targetSequence	assembly	targetSize	overhang	clipped	dropped
chr32_mat	NC_133057.1	GCF_048771995.1	5583650	83	1	3
chr8_mat	NC_133033.1	GCF_048771995.1	32653262	35	1	1
chr8_pat	CM109758.1	GCA_048772025.1	32694872	34	1	1
